Publications

1. Advanced methods for gene network identification and noise decomposition from single-cell data.
   Zhou Fang, Ankit Gupta, Sant Kumar, Mustafa Khammash
   Nature Communications, vol. 15, article number 4911, 2024. [URL]
2. Stochastic weak passivity for weakly stabilizing stochastic systems with nonvanishing noise
   Zhou Fang, Chuanhou Gao, Denis Dochain
   Systems & Control Letters, vol. 180, pp. 105606, 2023. [URL]
3. Convergence of regularized particle filters for stochastic reaction networks
   Zhou Fang, Ankit Gupta, Mustafa Khammash
   SIAM Journal on Numerical Analysis, vol. 61, pp. 399-430, 2023. [URL]
4. On the relation between ω-limit set and boundaries of mass-action chemical reaction networks
   Xiaoyu Zhang , Zhou Fang, Chuanhou Gao, Denis Dochain
   Automatica 149 : 110828, 2023. [URL]
5. Efficacy of regularized multi-task learning based on SVM models
   Shaohan Chen, Zhou Fang, Sijie Lu, Chuanhou Gao
   IEEE transactions on Cybernetics, 2022. [URL]
6. Stochastic filtering for multiscale stochastic reaction networks based on hybrid approximations
   Zhou Fang, Ankit Gupta, Mustafa Khammash
   Journal of Computational Physics, vol. 467, pp. 111441, 2022. [URL]
7. Noise-to-state Exponentially Stabilizing (state, input)-disturbed CSTRs with Non-vanishing noise
   Yafei Lu, Zhou Fang, Chuanhou Gao, Denis Dochain
   Automatica, vol. 142, pp. 110387, 2022. [URL]
8. A graphic formulation of non-isothermal chemical reaction systems and the analysis of detailed balanced networks
   Zhou Fang, Arjan van der Schaft, Chuanhou Gao
   SIAM Journal on Applied Dynamical Systems, 19 (4), 2594-2627, 2020. [URL]
9. Time-domain Boundedness of Noise-to-State Exponentially Stable Systems
   Zhou Fang, Chuanhou Gao
   ESAIM: Control, Optimisation and Calculus of Variations, vol. 26, no. 105, 2020. [URL]
10. Adaptation mechanisms in phosphorylation cycles by allosteric binding and gene autoregulation
    Zhou Fang, Bayu Jayawardhana, Arjan van der Schaft, Chuanhou Gao
    IEEE Transactions on Automatic Control, vol. 65, no. 8, pp. 3457–3470, 2020. [URL]
11. Lyapunov function partial differential equations for chemical reaction networks: some special cases
    Zhou Fang and Chuanhou Gao
    SIAM Journal on Applied Dynamical Systems, 18 (2), 1163-1199, 2019. [URL]
12. Complex balancing reconstructed to the asymptotic stability of mass-action chemical reaction networks with conservation laws
    Min Ke, Zhou Fang, Chuanhou Gao
    SIAM Journal on Applied Mathematics, 79 (1), 55-74, 2019. [URL]
13. Stabilization of input-disturbed stochastic port-Hamiltonian systems via passivity
    Zhou Fang, Chuanhou Gao
    IEEE Transactions on Automatic Control, vol. 62, no. 8, pp. 4159–4166, 2017.  [URL]

1. Effective filtering approach for joint parameter-state estimation in SDEs via Rao-Blackwellization and modularization
   Zhou Fang, Ankit Gupta, Mustafa Khammash
   IEEE 63th Conference on Decision and Control (CDC), to appear, 2024. [ArXiv]
2. Stochastic filters based on hybrid approximations of multiscale stochastic reaction networks
   Zhou Fang, Ankit Gupta, Mustafa Khammash
   IEEE 59th Conference on Decision and Control (CDC), pp. 4616- 4621, 2020. [URL]
3. Thermodynamic Potentials from Stationary Probabilities
   Zhou Fang, B. Erik Ydstie, Chuanhou Gao
   the 3rd IFAC Workshop on Thermodynamic Foundations for Mathematical Systems Theory, 2019. [URL]
4. Integral regulation mechanism in phosphorylation cycles
   Zhou Fang, Bayu Jayawardhana, Arjan van der Schaft, Chuanhou Gao
   IEEE 56th Conference on Decision and Control (CDC), pp. 5322-5327, 2017. [URL]

1. Elena D’Ambrosio, Zhou Fang, Ankit Gupta, Mustafa Khammash, “Filtered finite state projection method for the analysis and estimation of stochastic biochemical reaction networks". [bioRxiv]
2. Shaoqing Chen, Zhou Fang, Zheng Hu, Da Zhou, “Fixed-budget simulation method for growing cell populations". [arXiv]
3. Zhou Fang, Ankit Gupta, Mustafa Khammash, “Mitigating degeneracy in joint parameter-state filtering for SDEs via Rao-Blackwellization and modularization", submitted.